nf-core/hlatyping

This is stars and forks stats for /nf-core/hlatyping repository. As of 03 May, 2024 this repository has 47 stars and 26 forks.

Introduction nf-core/hlatyping is a bioinformatics best-practice analysis pipeline for Precision HLA typing from next-generation sequencing data. The pipeline does next-generation sequencing-based Human Leukozyte Antigen (HLA) typing using OptiType. OptiType is a HLA genotyping algorithm based on integer linear programming. Reads of whole exome/genome/transcriptome sequencing data are mapped against a reference of known MHC class I alleles. To produce accurate 4-digit HLA genotyping predictions,...