nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

NextflowGroovyRPythonPerlHTMLworkflowpipelinenextflowchipchip-seqmacs2nf-corechromatin-immunoprecipitationpeak-calling
This is stars and forks stats for /nf-core/chipseq repository. As of 08 May, 2024 this repository has 153 stars and 121 forks.

Introduction nfcore/chipseq is a bioinformatics analysis pipeline used for Chromatin ImmunopreciPitation sequencing (ChIP-seq) data. On release, automated continuous integration tests run the pipeline on a full-sized dataset on the AWS cloud infrastructure. The dataset consists of FoxA1 (transcription factor) and EZH2 (histone,mark) IP experiments from Franco et al. 2015 (GEO: GSE59530, PMID: 25752574) and Popovic et al. 2014 (GEO: GSE57632, PMID: 25188243), respectively. This ensures that the pipeline...
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