nf-core/clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

NextflowGroovyPythonPerlHTMLDockerfileworkflowpipelinenextflowclipclip-seqnf-corepeak-callingrna-rbp-interactions
This is stars and forks stats for /nf-core/clipseq repository. As of 03 May, 2024 this repository has 16 stars and 21 forks.

Introduction nf-core/clipseq is a bioinformatics best-practice analysis pipeline for CLIP (cross-linking and immunoprecipitation) sequencing data analysis to study RNA-protein interactions. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible. Pipeline Summary By default, the pipeline currently performs the following: Adapter...
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