This is stars and forks stats for /nf-core/vipr repository. As of 29 Apr, 2024 this repository has 14 stars and 10 forks.
Introduction nf-core/vipr is a bioinformatics best-practice analysis pipeline for assembly and intrahost / low-frequency variant calling for viral samples. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible. Pipeline Steps Step Main program/s Trimming, combining of read-pairs per sample and QC Skewer, FastQC Decontamination decont Metagenomics...
Introduction nf-core/vipr is a bioinformatics best-practice analysis pipeline for assembly and intrahost / low-frequency variant calling for viral samples. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible. Pipeline Steps Step Main program/s Trimming, combining of read-pairs per sample and QC Skewer, FastQC Decontamination decont Metagenomics...
| repo | techs | stars | weekly | forks | weekly |
|---|---|---|---|---|---|
| nf-core/bactmap | NextflowGroovyPython | 45 | 0 | 23 | 0 |
| nf-core/isoseq | NextflowGroovyPython | 16 | 0 | 6 | 0 |
| nf-core/crisprvar | NextflowHTMLPython | 5 | 0 | 3 | 0 |
| nf-core/genomeassembler | NextflowGroovyPython | 13 | 0 | 5 | 0 |
| nf-core/nanostring | NextflowGroovyR | 6 | +1 | 1 | 0 |
| nf-core/genomeannotator | NextflowGroovyPython | 12 | 0 | 8 | 0 |
| nf-core/ssds | NextflowGroovyPython | 1 | 0 | 2 | 0 |
| nf-core/rnavar | NextflowGroovyPython | 20 | 0 | 20 | 0 |
| nf-core/airrflow | NextflowGroovyPython | 32 | 0 | 20 | 0 |
| nf-core/gwas | NextflowPythonGroovy | 15 | 0 | 14 | 0 |