This is stars and forks stats for /nf-core/bactmap repository. As of 29 Apr, 2024 this repository has 45 stars and 23 forks.
Introduction nf-core/bactmap is a bioinformatics best-practice analysis pipeline for mapping short reads from bacterial WGS to a reference sequence, creating filtered VCF files, making pseudogenomes based on high quality positions in the VCF files and optionally creating a phylogeny from an alignment of the pseudogenomes. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making...
Introduction nf-core/bactmap is a bioinformatics best-practice analysis pipeline for mapping short reads from bacterial WGS to a reference sequence, creating filtered VCF files, making pseudogenomes based on high quality positions in the VCF files and optionally creating a phylogeny from an alignment of the pseudogenomes. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making...
| repo | techs | stars | weekly | forks | weekly |
|---|---|---|---|---|---|
| nf-core/isoseq | NextflowGroovyPython | 16 | 0 | 6 | 0 |
| nf-core/crisprvar | NextflowHTMLPython | 5 | 0 | 3 | 0 |
| nf-core/genomeassembler | NextflowGroovyPython | 13 | 0 | 5 | 0 |
| nf-core/nanostring | NextflowGroovyR | 6 | +1 | 1 | 0 |
| nf-core/genomeannotator | NextflowGroovyPython | 12 | 0 | 8 | 0 |
| nf-core/ssds | NextflowGroovyPython | 1 | 0 | 2 | 0 |
| nf-core/rnavar | NextflowGroovyPython | 20 | 0 | 20 | 0 |
| nf-core/airrflow | NextflowGroovyPython | 32 | 0 | 20 | 0 |
| nf-core/gwas | NextflowPythonGroovy | 15 | 0 | 14 | 0 |
| nf-core/circrna | NextflowRGroovy | 31 | 0 | 13 | 0 |