nf-core/airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

NextflowGroovyPythonRShellHTMLCSSworkflowpipelinenextflownf-coreb-cellrepseqimmcantationimmunorepertoireairr
This is stars and forks stats for /nf-core/airrflow repository. As of 04 May, 2024 this repository has 32 stars and 20 forks.

Introduction ** nf-core/airrflow ** is a bioinformatics best-practice pipeline to analyze B-cell or T-cell repertoire sequencing data. It makes use of the Immcantation toolset. The input data can be targeted amplicon bulk sequencing data of the V, D, J and C regions of the B/T-cell receptor with multiplex PCR or 5' RACE protocol, or assembled reads (bulk or single cell). The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner....
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