This is stars and forks stats for /nf-core/rnasplice repository. As of 06 May, 2024 this repository has 9 stars and 13 forks.
Introduction nf-core/rnasplice is a bioinformatics pipeline for alternative splicing analysis of RNA sequencing data obtained from organisms with a reference genome and annotation. Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter and quality trimming (TrimGalore) Alignment with STAR Choice of quantification depending on analysis type: STAR -> Salmon STAR -> featureCounts STAR -> HTSeq (DEXSeq count) Sort and index alignments (SAMtools) Create bigWig coverage files (BEDTools,...
Introduction nf-core/rnasplice is a bioinformatics pipeline for alternative splicing analysis of RNA sequencing data obtained from organisms with a reference genome and annotation. Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter and quality trimming (TrimGalore) Alignment with STAR Choice of quantification depending on analysis type: STAR -> Salmon STAR -> featureCounts STAR -> HTSeq (DEXSeq count) Sort and index alignments (SAMtools) Create bigWig coverage files (BEDTools,...
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