sanger-tol/genomeassembly

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Introduction sanger-tol/genomeassembly is a bioinformatics pipeline for a genome assembly for HiFi, Illumina 10x (optional), and HiC data. It performs the following steps: raw assembly, purging from haplotigs, optional polishing, and scaffolding. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. The Nextflow DSL2 implementation...