bactopia/bactopia

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Bactopia Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia can be split into three main parts: Bactopia Datasets, Bactopia Analysis Pipeline, and Bactopia Tools. Bactopia Datasets provide a framework for including many existing public datasets, as well as private datasets, into your analysis The process of downloading, building, and (or)...