Arcadia-Science/metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

NextflowGroovyPythonHTML
This is stars and forks stats for /Arcadia-Science/metagenomics repository. As of 03 May, 2024 this repository has 32 stars and 2 forks.

Arcadia-Science/metagenomics Introduction Arcadia-Science/metagenomics is a pipeline for profiling metagenomes obtained through either Illumina or Nanopore technologies. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. The Nextflow DSL2 implementation of this pipeline uses one container per process which makes it much...
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