This is stars and forks stats for /vsbuffalo/codonstats repository. As of 29 Apr, 2024 this repository has 1 stars and 0 forks.
Codon Analysis These are some simple programs for doing codon frequency analysis using MDS plots. Most of this is currently geared around trying to do this for results from findorf, so it may belong in findorf/contrib more than a seperate module. Operation python orf_codon_table.py orfs.fasta > orf_table.tsv Rscript codon_stats.R orf_table.tsv <sample-size> Where the <sample-size> corresponds to the number of ORFs to sample from the psuedogene (majority frameshift or internal stop...
Codon Analysis These are some simple programs for doing codon frequency analysis using MDS plots. Most of this is currently geared around trying to do this for results from findorf, so it may belong in findorf/contrib more than a seperate module. Operation python orf_codon_table.py orfs.fasta > orf_table.tsv Rscript codon_stats.R orf_table.tsv <sample-size> Where the <sample-size> corresponds to the number of ORFs to sample from the psuedogene (majority frameshift or internal stop...
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