nf-core/rnaseq

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Introduction nf-core/rnaseq is a bioinformatics pipeline that can be used to analyse RNA sequencing data obtained from organisms with a reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix and extensive QC report. Merge re-sequenced FastQ files (cat) Sub-sample FastQ files and auto-infer strandedness (fq, Salmon) Read QC (FastQC) UMI extraction (UMI-tools) Adapter and...