nf-core/quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

NextflowGroovyPythonRHTMLworkflowpipelinenextflowproteomicsdiamass-spectrometryopenmsproteogenomicstmtnf-coremass-speclfq
This is stars and forks stats for /nf-core/quantms repository. As of 28 Apr, 2024 this repository has 14 stars and 23 forks.

Introduction nf-core/quantms is a bioinformatics best-practice analysis pipeline for Quantitative Mass Spectrometry (MS). Currently, the workflow supports three major MS-based analytical methods: (i) Data dependant acquisition (DDA) label-free and Isobaric quantitation (e.g. TMT, iTRAQ); (ii) Data independent acquisition (DIA) label-free quantification (for details see our in-depth documentation on quantms). The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute...
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