nf-core/mag

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Introduction nf-core/mag is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes. Pipeline summary By default, the pipeline currently performs the following: it supports both short and long reads, quality trims the reads and adapters with fastp and Porechop, and performs basic QC with FastQC, and merge multiple sequencing runs. The pipeline then: assigns taxonomy to reads using Centrifuge and/or Kraken2 performs assembly using MEGAHIT and SPAdes,...