nf-core/diaproteomics

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

NextflowPythonGroovyRHTMLDockerfileworkflowpipelinenextflowproteomicsopenmsnf-coredata-independent-proteomicsdia-proteomics
This is stars and forks stats for /nf-core/diaproteomics repository. As of 27 Apr, 2024 this repository has 12 stars and 10 forks.

Automated quantitative analysis of DIA proteomics mass spectrometry measurements. Introduction nfcore/diaproteomics is a bioinformatics analysis pipeline used for quantitative processing of data independant (DIA) proteomics data (preprint available here). The workflow is based on the OpenSwathWorkflow for SWATH-MS proteomic data. DIA RAW files (mzML) serve as inputs and library search is performed based on a given input spectral library. Optionally, spectral libraries can be generated (EasyPQP) from...
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