neherlab/pangraph

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pangraph a bioinformatic toolkit to align large sets of closely related genomes into a graph data structure Overview pangraph provides both a command line interface, as well as a Julia library, to find homology amongst large collections of closely related genomes. The core of the algorithm partitions each genome into pancontigs that represent a sequence interval related by vertical descent. Each genome is then an ordered walk along pancontigs; the collection of all genomes form a graph that captures...