microsoft/evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

PythonShellgenerative-modelprotein-sequencesmultiple-sequence-alignmentdiscrete-diffusion
This is stars and forks stats for /microsoft/evodiff repository. As of 10 May, 2024 this repository has 295 stars and 31 forks.

EvoDiff Description In this work, we introduce a general-purpose diffusion framework, EvoDiff, that combines evolutionary-scale data with the distinct conditioning capabilities of diffusion models for controllable protein generation in sequence space. EvoDiff generates high-fidelity, diverse, and structurally-plausible proteins that cover natural sequence and functional space. Critically, EvoDiff can generate proteins inaccessible to structure-based models, such as those with disordered regions,...
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