brentp/somalier

This is stars and forks stats for /brentp/somalier repository. As of 05 May, 2024 this repository has 226 stars and 32 forks.

somalier: extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF Quick Start somalier makes checking any number of samples for identity easy directly from the alignments or from jointly-called VCFs: The first step is to extract sites. For VCF just use: somalier extract -d extracted/ --sites sites.vcf.gz -f /data/human/g1k_v37_decoy.fa $cohort.vcf.gz with a sites file from releases For BAM or CRAM, use: This is parallelizable by sample via cluster or...