This is stars and forks stats for /brentp/mosdepth repository. As of 02 May, 2024 this repository has 602 stars and 98 forks.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing. mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome. mean per-window depth given a window size--as would be used for CNV calling. the mean per-region given a BED file of regions. the mean or median per-region cumulative coverage histogram given a window size a distribution of proportion of bases covered at or above a given threshold for each chromosome and genome-wide. quantized...
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing. mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome. mean per-window depth given a window size--as would be used for CNV calling. the mean per-region given a BED file of regions. the mean or median per-region cumulative coverage histogram given a window size a distribution of proportion of bases covered at or above a given threshold for each chromosome and genome-wide. quantized...
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