brentp/cyvcf2

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cyvcf2 Note: cyvcf2 versions < 0.20.0 require htslib < 1.10. cyvcf2 versions >= 0.20.0 require htslib >= 1.10 The latest documentation for cyvcf2 can be found here: If you use cyvcf2, please cite the paper Fast python (2 and 3) parsing of VCF and BCF including region-queries. cyvcf2 is a cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files. Attributes like variant.gt_ref_depths work for diploid samples and return a numpy array directly so they are immediately...