aqlaboratory/openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

PythonJupyter NotebookShellCudaC++Dockerfileprotein-structurepytorchalphafold2
This is stars and forks stats for /aqlaboratory/openfold repository. As of 07 May, 2024 this repository has 2110 stars and 363 forks.

Figure: Comparison of OpenFold and AlphaFold2 predictions to the experimental structure of PDB 7KDX, chain B. OpenFold A faithful but trainable PyTorch reproduction of DeepMind's AlphaFold 2. Features OpenFold carefully reproduces (almost) all of the features of the original open source inference code (v2.0.1). The sole exception is model ensembling, which fared poorly in DeepMind's own ablation testing and is being phased out in future DeepMind experiments. It is omitted here for the sake of reducing...
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