althonos/pyhmmer

Cython bindings and Python interface to HMMER3.

CythonPythonCOtherbioinformaticspython-librarypython-bindingshidden-markov-modelcython-libraryhmmersequence-analysishmmer3
This is stars and forks stats for /althonos/pyhmmer repository. As of 07 May, 2024 this repository has 90 stars and 11 forks.

πŸπŸŸ‘β™¦οΈπŸŸ¦ PyHMMER Cython bindings and Python interface to HMMER3. πŸ—ΊοΈ Overview HMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py): single...
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