LCR-BCCRC/DLBCL-tumor-evolution

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DLBCL Tumor Evolution This repository contains all code used in the statistical analysis of sequencing data from serial biopsies of patients with relapsed/refractory diffuse large B-cell lymphoma. All R packages used in the analysis can be installed reproducibly with renv, using any R version 4.1.*. Sequencing data analysis Sequencing files were processed outside of this repository using modules from LCR-Modules as follows: Sequencing Type Output Module(s) genome, exome, LySeqST Somatic variant calls slms_3-1.0,...