IlyaGrebnov/libcubwt

libcubwt is a library for GPU accelerated suffix array and burrows wheeler transform construction.

Cudagpucudabwtsuffixarrayburrows-wheeler-transformsuffix-arraysaca
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libcubwt The libcubwt is a library for fast (see Benchmarks below) GPU-based Burrows-Wheeler transform construction on the CUDA platform using prefix doubling + Skew/DC3 approach as described in the following papers: Vitaly Osipov, Parallel Suffix Array Construction for Shared Memory Architectures, 2012 Leyuan Wang, Sean Baxter, and John D. Owens Fast Parallel Suffix Array on the GPU, 2015 Florian Büren, Daniel Jünger, Robin Kobus, Christian Hundt, Bertil Schmidt Suffix Array Construction on Multi-GPU...
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