tseemann/snippy

✂️ ⚡ Rapid haploid variant calling and core genome alignment

PerlOthersnpsvcfvariant-callingbacteriaindel-discoveryhaploidfastq-analysis
This is stars and forks stats for /tseemann/snippy repository. As of 29 Mar, 2024 this repository has 409 stars and 110 forks.

Snippy Rapid haploid variant calling and core genome alignment Author Torsten Seemann Synopsis Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference...
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