r3fang/SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

Rmachine-learning-algorithmssequencingepigeneticsbioinformatics-pipelinesingle-cell-analysissingle-cell-atac-seq
This is stars and forks stats for /r3fang/SnapATAC repository. As of 08 May, 2024 this repository has 275 stars and 119 forks.

SnapATAC (Latest Updates: 2019-09-19) SnapATAC (Single Nucleus Analysis Pipeline for ATAC-seq) is a fast, accurate and comprehensive method for analyzing single cell ATAC-seq datasets. Please find the latest version SnapATAC (2.0) by the following link: https://github.com/kaizhang/SnapATAC2 Latest News SnapATAC links distal elements to putative target genes SnapATAC integrates scRNA and scATAC SnapATAC employs a new method for dimensionality reduction SnapATAC enables clustering using leiden algorithm SnapATAC...
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