nf-core/scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

NextflowGroovyPythonRHTMLworkflowrna-seqpipelinenextflowsingle-cellkallisto10x-genomics10xgenomicsnf-corebustoolsalevincellrangerstar-solo
This is stars and forks stats for /nf-core/scrnaseq repository. As of 25 Apr, 2024 this repository has 100 stars and 108 forks.

Introduction nf-core/scrnaseq is a bioinformatics best-practice analysis pipeline for processing 10x Genomics single-cell RNA-seq data. This is a community effort in building a pipeline capable to support: Alevin-Fry + AlevinQC STARSolo Kallisto + BUStools Cellranger UniverSC Documentation The nf-core/scrnaseq pipeline comes with documentation about the pipeline usage, parameters and output. Usage :::note If you are new to Nextflow and nf-core, please refer to this page on how to set-up Nextflow....
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