nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline

NextflowGroovyRPythonPerlHTMLworkflownanoporepipelinenextflowalignmentqcdemultiplexingnf-core
This is stars and forks stats for /nf-core/nanoseq repository. As of 20 Apr, 2024 this repository has 122 stars and 52 forks.

Introduction nfcore/nanoseq is a bioinformatics analysis pipeline for Nanopore DNA/RNA sequencing data that can be used to perform basecalling, demultiplexing, QC, alignment, and downstream analysis. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. The Nextflow DSL2 implementation of this pipeline uses one container...
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