nf-core/funcscan

(Meta-)genome screening for functional and natural product gene sequences

NextflowGroovyPythonHTMLworkflowbioinformaticspipelinenextflowampassemblyfunctionmetagenomicsamrscreeningantimicrobial-peptidessecondary-metabolitesantibiotic-resistancecontigsbgcargnatural-productsantimicrobial-resistance-genesbiosynthetic-gene-clusters
This is stars and forks stats for /nf-core/funcscan repository. As of 19 Apr, 2024 this repository has 43 stars and 12 forks.

Introduction nf-core/funcscan is a bioinformatics best-practice analysis pipeline for the screening of nucleotide sequences such as assembled contigs for functional genes. It currently features mining for antimicrobial peptides, antibiotic resistance genes and biosynthetic gene clusters. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results...
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