nf-core/cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

NextflowPythonGroovyPerlHTMLAwkDockerfileworkflowpipelinenextflownf-corecutandrun-seqcutandruncutandtag-seqcutandtag
This is stars and forks stats for /nf-core/cutandrun repository. As of 25 Apr, 2024 this repository has 51 stars and 26 forks.

Introduction nf-core/cutandrun is a best-practice bioinformatic analysis pipeline for CUT&RUN, CUT&Tag, and TIPseq experimental protocols that were developed to study protein-DNA interactions and epigenomic profiling. CUT&RUN Meers, M. P., Bryson, T. D., Henikoff, J. G., & Henikoff, S. (2019). Improved CUT&RUN chromatin profiling tools. eLife, 8. https://doi.org/10.7554/eLife.46314 CUT&Tag Kaya-Okur, H. S., Wu, S. J., Codomo, C. A., Pledger, E. S., Bryson, T. D., Henikoff,...
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