nf-core/ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

NextflowGroovyPythonRShellHTMLworkflowpipelinenextflowmetagenomicspacbioednamicrobiomeiontorrentilluminametabarcoding16srrnaits18staxonomic-classificationamplicon-sequencingqiime2nf-coretaxonomic-profiling
This is stars and forks stats for /nf-core/ampliseq repository. As of 25 Apr, 2024 this repository has 130 stars and 85 forks.

Introduction nfcore/ampliseq is a bioinformatics analysis pipeline used for amplicon sequencing, supporting denoising of any amplicon and, currently, taxonomic assignment of 16S, ITS, CO1 and 18S amplicons. Phylogenetic placement is also possible. Supported is paired-end Illumina or single-end Illumina, PacBio and IonTorrent data. Default is the analysis of 16S rRNA gene amplicons sequenced paired-end with Illumina. A video about relevance, usage and output of the pipeline (version 2.1.0; 26th Oct....
Read on GithubGithub Stats Page
repotechsstarsweeklyforksweekly
nf-core/funcscanNextflowGroovyPython430120
nf-core/eagerNextflowGroovyPython1020710
nf-core/cutandrunNextflowPythonGroovy510260
nf-core/sarekNextflowGroovyOther2750328+2
nf-core/viralreconNextflowGroovyPython1010900
apache/cordova-plugin-inappbrowserObjective-CJavaJavaScript1.1k02.1k0
zendesk/chat_sdk_iosObjective-CRubySwift180120
kstenerud/KSCrashObjective-CCC++4.1k06910
swisspol/GCDWebServerObjective-CJavaScriptSwift6.4k+11.2k0
utmapp/UTMSwiftObjective-CShell21.6k01.2k0