lh3/pangene

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Getting Started # Install pangene git clone https://github.com/lh3/pangene cd pangene && make # Generate the C4 example with provided alignment ./pangene test/C4/*.paf.gz > C4.gfa # Visit http://pangene.liheng.org for pangene HPRC graph # Align proteins to each genome (general use cases; no examples) miniprot --outs=0.97 --no-cs -Iut16 genome1.fna proteins.faa > genome1.paf miniprot --outs=0.97 --no-cs -Iut16 genome2.fna proteins.faa > genome2.paf # Construct a pangene graph pangene...