joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

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This is stars and forks stats for /joey711/phyloseq repository. As of 29 Apr, 2024 this repository has 518 stars and 181 forks.

phyloseq Quick Install In R terminal: if(!requireNamespace("BiocManager")){ install.packages("BiocManager") } BiocManager::install("phyloseq") See the phyloseq installation page for further details, examples. Article on Improved Microbiome Analysis McMurdie and Holmes (2014) Waste Not, Want Not: Why Rarefying Microbiome Data is Statistically Inadmissible PLoS Computational Biology 10(4): e1003531 Presubmission versions ahead of acceptance (2013): PDF version 2, PDF version 1 Peer-reviewed articles...
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