CenterForMedicalGeneticsGhent/nf-cmgg-germline

A nextflow pipeline for calling and annotating variants

NextflowGroovyHTMLDockerfile
This is stars and forks stats for /CenterForMedicalGeneticsGhent/nf-cmgg-germline repository. As of 19 Apr, 2024 this repository has 1 stars and 1 forks.

CenterForMedicalGeneticsGhent/nf-cmgg-germline Introduction nf-cmgg-germline is a bioinformatics best-practice analysis pipeline for calling, joint-genotyping and annotating small variants variants for WGS and WES data. It uses HaplotypeCaller to call variants, GenotypeGVCFs to genotype and EnsemblVEP to annotate. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation...
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